aaron 5079f35e40 better method names for read based reference ordered data access. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3069 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-24 16:13:31 +00:00
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AllLocusViewTest.java	Rework the way the MicroScheduler handles locus shards to handle intervals that span shards	2010-03-11 18:40:31 +00:00
CoveredLocusViewTest.java	Rework the way the MicroScheduler handles locus shards to handle intervals that span shards	2010-03-11 18:40:31 +00:00
LocusReferenceViewTest.java	Test updated. Now we do not throw an exception when locus interval is out of bounds, we just return silently a reference context trimmed to the current shard boundaries. New test checks for trimming.	2010-03-22 17:37:52 +00:00
LocusViewTemplate.java	Rework the way the MicroScheduler handles locus shards to handle intervals that span shards	2010-03-11 18:40:31 +00:00
ReadBasedReferenceOrderedViewTest.java	better method names for read based reference ordered data access.	2010-03-24 16:13:31 +00:00
ReadReferenceViewTest.java	Rework the way the MicroScheduler handles locus shards to handle intervals that span shards	2010-03-11 18:40:31 +00:00
ReferenceOrderedViewTest.java	Performance improvements for RODs in conjunction with new sharding system.	2010-03-16 14:54:12 +00:00
ReferenceViewTemplate.java	Aaron: 1, GenomeLoc: 0. I changed our GenomeLoc class, seperating the creation of a genome loc (with the reference setup) to a parser class. GenomeLoc now just represents the actual genomic postion. The constructors are now package-protected (to enforce using the parser), but we may want to expose some constructors in the future.	2009-06-22 14:39:41 +00:00
ShardDataProviderTest.java	Rework the way the MicroScheduler handles locus shards to handle intervals that span shards	2010-03-11 18:40:31 +00:00