gatk3的最后一个经典版本3.8
 
 
 
 
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Mark DePristo 0722df46db gsafolkLSFLogs creates a subset of LSF MySQL db related to gsafolk only
Creates a SQL table in the MySQL server calcium at the Broad that contains only
key information about the LSF usage of members of the gsafolk fairshare group

Does this by first building a list of gsafolk uids, selecting lsf info from matter's
table, and inserts this information into the gsafolk_lsf queue as part of the
GATK schema.  The standard way to run this is with incremental refreshes enabled,
so that the program only fetches new raw lsf records with timestamps beyond the
max timestamp present in the GATK LSF table.

The default way to run this program is via cron with 'python private/python/gsafolkLSFLogs.py'
2012-02-10 11:12:20 -05:00
public BQSR with indels integrated! 2012-02-09 18:46:45 -05:00
settings Rev. tribble to fix BED codec bug in tribble 51 2012-01-17 16:40:26 -05:00
.gitignore Minor additions to the shared .gitignore file, now that Mark has checked one in. 2011-10-26 12:24:28 -04:00
LICENSE One last test... 2011-06-28 19:18:17 -04:00
build.xml Merged bug fix from Stable into Unstable 2012-01-24 15:19:29 -05:00
ivy.xml S3 upload now directly creates the XML report in memory and puts that in S3 2012-01-29 15:14:58 -05:00