aaron 871cf0f4f6 Call out ROD types by there record type, instead of the codec type (which was clumsy). So instead of: ... @Requires(value={},referenceMetaData=@RMD(name="eval",type= VCFCodec.class)) you'd say: @Requires(value={},referenceMetaData=@RMD(name="eval",type= VCFRecord.class)) Which is more in-line with what was done before. All instances in the existing codebase should be switched over. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3457 348d0f76-0448-11de-a6fe-93d51630548a		2010-05-28 14:52:44 +00:00
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annotator	fixed the build problem: there were two copies of the AnnotatorInputTable Codec and Feature in two different spots.	2010-05-26 14:47:15 +00:00
duplicates	forgot to update md5s	2009-12-29 20:31:29 +00:00
poolseq	A long overdue correction; all unit tests now end in 'UnitTest'. This was something we wanted to do for a while, and now with the performance tests coming, it was a good time to clean-up. Please label any new test appropriately: *UnitTest and *IntegrationTest are the two valid file name patterns for tests.	2010-04-08 06:14:15 +00:00
validation	Call out ROD types by there record type, instead of the codec type (which was clumsy). So instead of:	2010-05-28 14:52:44 +00:00
vcftools	Just like VariantFiltration but lets you match info fields out of the VCF instead of annotating them.	2010-01-29 15:38:03 +00:00
ClipReadsWalkersIntegrationTest.java	-Pushed base quals back down into SAMRecord; if -OQ is used, the SAMRecord quals get updated automatically	2010-03-17 16:00:10 +00:00
HapmapPoolAllelicInfoIntegrationTest.java	Hurrr -- this uses power as part of its output. Changes to the power calculation broke the md5s RIGHT AFTER I HAD FIXED THEM arghflrg.	2009-12-14 22:42:50 +00:00