Ryan Poplin 06dbe74a23 Merge pull request #609 from kcibul/kc_cancersimreads ... extended SimulateReadsForVariants to optionally use the AF field to indi...		2014-04-28 13:31:56 -04:00
..
VectorPairHMM	Removed g_haplotype* global variables in native code so that it works	2014-03-06 22:08:35 -08:00
c	…
chainFiles	The contig is named MT not M in b36. Delivers PT68890442.	2014-04-08 10:03:47 -04:00
doc	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
external-example	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00
gatk-framework	Merge pull request #609 from kcibul/kc_cancersimreads	2014-04-28 13:31:56 -04:00
gatk-package	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00
gatk-queue-extgen	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00
gsalib	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00
java/config	Moved files to maven directories.	2014-02-03 13:50:44 -05:00
package-tests	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00
perl	Fixing the liftover script to not require strict VCF header validation.	2013-11-07 09:02:17 -05:00
queue-framework	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00
queue-package	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00
repo	Rev Picard 1.111.1920	2014-04-16 14:39:19 -04:00
sting-root	Rev Picard 1.111.1920	2014-04-16 14:39:19 -04:00
sting-utils	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00