gatk3的最后一个经典版本3.8

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Chris Hartl 06d28c7f8b VariantsToBinaryPed: Move .fam file writing to initialize to ensure ordering matches the ordering of the VCF. Change the documentation to clarify that the fam files are not directly copied, but subset and re-ordered.		2013-10-10 12:53:15 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	One of the log10sumLog10s in the VQSR was missed in a previous bug fix. Thanks to Mike McCowan for spotting this one.	2013-08-28 12:40:08 -04:00
public	VariantsToBinaryPed: Move .fam file writing to initialize to ensure ordering matches the ordering of the VCF. Change the documentation to clarify that the fam files are not directly copied, but subset and re-ordered.	2013-10-10 12:53:15 -04:00
settings	- update picard, sam, variants and tribble after fixing bug in BCF2Utils.makeDictionary as reported in ticket 52571227	2013-08-21 12:06:42 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	build.xml: make ant -p output only important build targets	2013-07-19 14:35:00 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00

The Genome Analysis Toolkit