gatk-3.8/scala/qscript
chartl 06970ae039 A qscript that refines genotypes with beagle and merges them into one vcf (running currently on the recent chr20 production calls).
This will be librarized soon; but if you need to do something like this, feel free to cannibalize.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4387 348d0f76-0448-11de-a6fe-93d51630548a
2010-09-30 02:05:30 +00:00
..
chartl A qscript that refines genotypes with beagle and merges them into one vcf (running currently on the recent chr20 production calls). 2010-09-30 02:05:30 +00:00
depristo More Queue scripts for analysis 2010-09-12 14:04:10 +00:00
examples Fixed VariantEval rod binding names. 2010-09-24 14:52:51 +00:00
kshakir At chartl's superb suggestion, command line files are now all Files instead of old method of sometimes "has a File". Should be easier when reassigning them. 2010-09-02 21:30:48 +00:00
rpoplin At chartl's superb suggestion, command line files are now all Files instead of old method of sometimes "has a File". Should be easier when reassigning them. 2010-09-02 21:30:48 +00:00
fullCallingPipeline.q Default memory limit is now 4g (apparently necessary when testing on full 100-sample Autism_Daly dataset) 2010-09-27 05:43:08 +00:00
recalibrate.scala At chartl's superb suggestion, command line files are now all Files instead of old method of sometimes "has a File". Should be easier when reassigning them. 2010-09-02 21:30:48 +00:00