gatk3的最后一个经典版本3.8

Menachem Fromer 066da80a3d Added KEEP_UNCONDTIONAL option which permits even sites with only filtered records to be included as unfiltered sites in the output		2012-01-19 18:19:58 -05:00
public	Added KEEP_UNCONDTIONAL option which permits even sites with only filtered records to be included as unfiltered sites in the output	2012-01-19 18:19:58 -05:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Changes to allow for external tests	2012-01-19 13:04:24 -05:00
ivy.xml	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00