06687bfaf6
-- Renamed old class AFCalcResultTracker. This object is now allocated by the AFCalc itself, since it is heavy-weight and was badly optimized in the UG with a thread-local variable. Now, since there's already a AFCalc thread-local there, we get that optimization for free. -- Removed the interface to provide the AFCalcResultTracker to getlog10PNonRef. -- Wrote new, clean but unused AFCalcResult object that will soon replace the tracker as the external interface to the AFCalc model results, leaving the tracker as an internal tracker structure. This will allow me to (1) finally test things exhaustively, as the contracts on this class are clear (2) finalize the IndependentAllelesDiploidExactAFCalc class as it can work with a meaningfully defined result across each object |
||
|---|---|---|
| .. | ||
| R | ||
| c | ||
| chainFiles | ||
| doc | ||
| java | ||
| keys | ||
| packages | ||
| perl | ||
| scala | ||
| testdata | ||