hanna 05575e2e56 Better bounding for the locus window. Don't make the locus window calculation blow up if the GenomeLoc ends ... up being outside the reference. Force the blowup elsewhere. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2573 348d0f76-0448-11de-a6fe-93d51630548a		2010-01-13 17:03:54 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Better bounding for the locus window. Don't make the locus window calculation blow up if the GenomeLoc ends	2010-01-13 17:03:54 +00:00
test/org/broadinstitute/sting	We emit genotype data in the VCF record if the format string instructs us to (regardless of whether or not genotypes are provided - this was the wrong test).	2010-01-13 15:40:27 +00:00