gatk3的最后一个经典版本3.8

David Roazen 0550b27799 Make downsampler classes themselves generic (instead of just the Downsampler interface) ... This is in response to a request from Mauricio to make it easier to use the downsamplers with GATKSAMRecords (as opposed to SAMRecords) without having to do any cumbersome typecasting. Sadly, Java language limitations make this sort of solution the best choice. Thanks to Khalid for his feedback on this issue. Also: -added a unit test to verify GATKSAMRecord support with no typecasting required -added some unit tests for the FractionalDownsampler that Mauricio will/might be using -moved classes from private to public to better sync up with my local development branch for engine integration		2012-06-13 16:43:39 -04:00
licensing	Remove old licensing	2012-04-25 12:23:08 -04:00
protected/java/src/org/broadinstitute/sting	build system overhaul	2012-05-17 15:16:29 -04:00
public	Make downsampler classes themselves generic (instead of just the Downsampler interface)	2012-06-13 16:43:39 -04:00
settings	Testing of BCF codec	2012-05-24 10:57:01 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	ant fasttest: for when you just can't wait	2012-06-01 15:17:18 -04:00
ivy.xml	Final updates to integration tests for BCF2	2012-05-24 10:58:59 -04:00