Eric Banks b07bf1950b Adding an integration test for another feature that I snuck in during a previous commit: we now allow lower-case bases in the REF/ALT alleles of a VCF and upper-case them (this had been turned off because the previous version used Strings to do the uppercasing whereas we stick with byte operations now).		2012-07-29 22:19:49 -04:00
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bcf2	Update integration tests to reflect new FT header line standard and new DiagnoseTargets field names	2012-06-28 10:06:06 -04:00
hapmap	A few misc. residual errors in last commit	2012-06-21 16:04:25 -04:00
vcf	Adding an integration test for another feature that I snuck in during a previous commit: we now allow lower-case bases in the REF/ALT alleles of a VCF and upper-case them (this had been turned off because the previous version used Strings to do the uppercasing whereas we stick with byte operations now).	2012-07-29 22:19:49 -04:00