Eric Banks ea21dc9cfb I just committed this - why didn't it work before? Trying again...		2013-01-06 12:44:13 -05:00
..
covariates	Enabling the Recal Report unit test (which looks like it was never ever enabled)	2012-12-26 15:35:50 -05:00
BQSRMode.java	Revert "Separated out the DoC calculations from the XHMM pipeline, so that CalcDepthOfCoverage can be used for calculating joint coverage on a per-base accounting over multiple samples (e.g., family samples)"	2012-09-10 15:52:39 -04:00
BQSRReadTransformer.java	Revert "Separated out the DoC calculations from the XHMM pipeline, so that CalcDepthOfCoverage can be used for calculating joint coverage on a per-base accounting over multiple samples (e.g., family samples)"	2012-09-10 15:52:39 -04:00
BaseRecalibration.java	Cleanup and unit tests for EventType and ReadRecalibrationInfo in BQSR	2013-01-04 11:39:25 -05:00
EventType.java	Cleanup and unit tests for EventType and ReadRecalibrationInfo in BQSR	2013-01-04 11:39:25 -05:00
QualQuantizer.java	Pushing in implementation of the Bayesian estimate of Qemp for the BQSR.	2013-01-02 15:21:44 -05:00
QuantizationInfo.java	Removed sorting by row from walkers	2013-01-04 11:52:33 -05:00
ReadCovariates.java	Cleanup and unit tests for EventType and ReadRecalibrationInfo in BQSR	2013-01-04 11:39:25 -05:00
RecalDatum.java	Handle long->int precision in Bayesian estimate	2013-01-06 12:26:32 -05:00
RecalDatumNode.java	Hooking up the Bayesian estimate code for calculating Qemp in BQSR; various fixes after adding unit tests.	2013-01-04 14:43:11 -05:00
RecalUtils.java	I just committed this - why didn't it work before? Trying again...	2013-01-06 12:44:13 -05:00
RecalibrationReport.java	Handle merge conflicts	2013-01-06 12:29:12 -05:00
RecalibrationTables.java	Cleanup and more unit tests for RecalibrationTables in BQSR	2013-01-05 12:50:27 -05:00