kshakir 8211cee0b2 Queue UI Improvements: ... - Forcing user to set the temp directory via -Djava.io.tmpdir to avoid filling up /tmp. - By default deleting job outputs tagged as intermediate. - Defaulting pipeline to scatter count 1 (no reads deleted). - Cleaning up temp classes even when scripting fails. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4573 348d0f76-0448-11de-a6fe-93d51630548a		2010-10-26 19:49:08 +00:00
..
org/broadinstitute/sting/queue	Queue UI Improvements:	2010-10-26 19:49:08 +00:00
BaseTransitionTableCalculator.scala	Scala walkers can now be build and run like any other walker in the GATK. Added the getUrlsForClasspath to PackageUtils, the Reflections package isn't getting the manifest files from jars in the classpath, and so we weren't seeing any walkers outside of the GenomeAnalysisTK.jar.	2009-11-02 06:02:41 +00:00
HelloWorld.scala	support for scala walkers	2009-08-28 00:15:01 +00:00
ScalaCountLoci.scala	Scala walkers can now be build and run like any other walker in the GATK. Added the getUrlsForClasspath to PackageUtils, the Reflections package isn't getting the manifest files from jars in the classpath, and so we weren't seeing any walkers outside of the GenomeAnalysisTK.jar.	2009-11-02 06:02:41 +00:00