Mauricio Carneiro 04d8bcaf19 Fixed bai removal on picard tools ... BAM index files were not being deleted because picard replaces the name of the file with bai instead of appending to it.		2011-08-22 18:03:39 -04:00
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examples	Fixed example unified genotyper pipeline to wrap filter expressions with quotes and use rod binding name "variant" instead of "vcf".	2011-08-03 02:21:01 -04:00
lib	moving the example scala scripts to the qscripts package.	2011-07-01 16:14:59 -04:00
DataProcessingPipeline.scala	Fixed bai removal on picard tools	2011-08-22 18:03:39 -04:00
GATKResourcesBundle.scala	Updating resource bundle generation qscript for changeover to git	2011-08-08 12:35:39 -04:00
MethodsDevelopmentCallingPipeline.scala	updating exome specific parameters in MDCP	2011-08-21 10:25:36 -04:00
PacbioProcessingPipeline.scala	a better name for the pacbio processing pipeline	2011-08-10 16:16:53 -04:00
StandardVariantEvaluation.scala	new home for the core qscripts	2011-06-30 11:32:06 -04:00