Mark DePristo 0384ce5d34 Simple optimizations for BCF2Encoder ... -- Inline encodeString that doesn't go via List<Byte> intermediate -- Inline encodeString that uses byte[] directly so that we can go from Allele.getBytes() => BCF2 -- Fast paths for Atomic Float and Atomic Integer values avoiding intermediate list creation -- Final UG integration test update		2012-06-14 16:42:39 -04:00
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R	Bugfix for R 2.15 not including reshape	2012-06-14 16:42:29 -04:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	…
doc	…
java	Simple optimizations for BCF2Encoder	2012-06-14 16:42:39 -04:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Temporary fake release directories for Bamboo testing purposes	2012-05-31 16:04:07 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	MD5DB for integrationtest management now writes out a md5mismatches files for clean analysis	2012-06-14 16:42:27 -04:00
testdata	More testdata test files	2012-06-14 16:42:35 -04:00