gatk-3.8/public/java/test/org/broadinstitute/sting
Mark DePristo 0376d73ece Improved, public version of ErrorRateByCycle
-- A cleaner table output (molten).  For those interested in seeing how this can be done with GATKReports look here for a nice clean example
-- Integration tests
-- Minor improvements to GATKReportTable with methods to getPrimaryKeys
2012-03-07 13:10:08 -05:00
..
alignment Reinitialize random seed in the bwa bindings from the fixed seed stored in the 2011-07-22 13:41:53 -04:00
commandline Added ability to specify arguments in files via -args/--arg_file 2011-10-24 15:58:34 -04:00
gatk Improved, public version of ErrorRateByCycle 2012-03-07 13:10:08 -05:00
jna When using bam list mode in HSP deriving VCF name from bam list instead of requiring an additional parameter. 2011-12-16 18:09:25 -05:00
utils Do not fail tests that require the GATK private key if the user does not have permission to read it 2012-03-06 15:57:02 -05:00
BaseTest.java Public-key authorization scheme to restrict use of NO_ET 2012-03-06 00:09:43 -05:00
MD5DB.java Merged bug fix from Stable into Unstable 2011-10-13 18:02:06 -04:00
MedianUnitTest.java Adding more unit tests and contracts to PairHMM util class. Updating HaplotypeCaller to use the new PairHMM util class. Now that the HMM result isn't dependent on the length of the haplotype there is no reason to ensure all haplotypes have the save length which simplifies the code considerably. 2012-03-05 08:28:42 -05:00
StingTextReporter.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
WalkerTest.java Public-key authorization scheme to restrict use of NO_ET 2012-03-06 00:09:43 -05:00