Mark DePristo 03741fb640 Merge branch 'master' into rodRefactor ... Conflicts: public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/VariantAnnotatorEngine.java public/java/test/org/broadinstitute/sting/gatk/walkers/indels/IndelRealignerIntegrationTest.java public/java/test/org/broadinstitute/sting/gatk/walkers/indels/IndelRealignerPerformanceTest.java public/java/test/org/broadinstitute/sting/utils/variantcontext/VariantContextIntegrationTest.java		2011-08-02 14:21:58 -04:00
..
net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Merge branch 'master' into rodRefactor	2011-08-02 14:21:58 -04:00