Mark DePristo 034a997d07 Generalized Reads -> Fragment calculation ... -- Supports ReadBackedPileup -> FragmentCollection as before -- Added support for List<SAMRecord> -> FragmentCollection for Ryan's haplotype caller -- General cleanup, renaming, move to separate package, more extensive unit tests, etc. -- Added toFragment() function to ReadBackedPileup interface		2011-10-26 15:54:38 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Generalized Reads -> Fragment calculation	2011-10-26 15:54:38 -04:00
test	Generalized Reads -> Fragment calculation	2011-10-26 15:54:38 -04:00