gatk3的最后一个经典版本3.8

Mark DePristo 034a997d07 Generalized Reads -> Fragment calculation ... -- Supports ReadBackedPileup -> FragmentCollection as before -- Added support for List<SAMRecord> -> FragmentCollection for Ryan's haplotype caller -- General cleanup, renaming, move to separate package, more extensive unit tests, etc. -- Added toFragment() function to ReadBackedPileup interface		2011-10-26 15:54:38 -04:00
public	Generalized Reads -> Fragment calculation	2011-10-26 15:54:38 -04:00
settings	Picard upgrade to 1.55.	2011-10-24 17:02:27 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Embedding gsalib source and queueJobReport R scripts in the dist and package jars.	2011-10-24 15:58:34 -04:00
ivy.xml	Including private parts	2011-10-25 20:29:17 -04:00