ebanks 02f1af0743 Don't die when a readgroup is absent from the covariates table - it could ... happen when all reads are unmapped (or have MQ0); instead, just don't alter the quals. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1394 348d0f76-0448-11de-a6fe-93d51630548a		2009-08-10 03:10:33 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Don't die when a readgroup is absent from the covariates table - it could	2009-08-10 03:10:33 +00:00
test/org/broadinstitute/sting	Updated polarized reference priors, need DiploidGenotypePriors class that is directly used by the NewHotness genotypelikelihoods, more bug fixes and refactoring, etc.	2009-08-07 19:00:06 +00:00