hanna 023654696e First pass at handling SAMFileReaders using a SAMReaderID. This allows us to firewall ... GATK users from the readers, which they could abuse in ways that could destabilize the GATK. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2923 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-04 00:59:32 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	First pass at handling SAMFileReaders using a SAMReaderID. This allows us to firewall	2010-03-04 00:59:32 +00:00
test/org/broadinstitute/sting	a little clean-up: move setting the bases of generated reads into Artificial SAM Utils now that the clean read injector test is gone.	2010-03-03 16:31:45 +00:00