carneiro 02006954bc UG: small bug fix when creating empty variant contexts in UG for the -EMIT_ALL_SITES to allow indels. ... GAV: First version of the walker that validates reads from a BAM file based on an annotated VCF with TP/FP annotations. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5396 348d0f76-0448-11de-a6fe-93d51630548a		2011-03-07 22:51:04 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	UG: small bug fix when creating empty variant contexts in UG for the -EMIT_ALL_SITES to allow indels.	2011-03-07 22:51:04 +00:00
test	Fixed integration test to reflect changes regarding when comp tracks got subset to fewer samples and whether no-call sites would get pulled in for comp tracks.	2011-03-07 20:25:57 +00:00