hanna 3d922a019f Basic support for very simple index-driven locus traversals. Interface has been changed to ... support batched intervals in a single shard, but intervals are not yet compressed into a single shard. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2730 348d0f76-0448-11de-a6fe-93d51630548a		2010-01-29 03:14:26 +00:00
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arguments	Looks bigger than it is:	2010-01-15 00:14:35 +00:00
datasources	Basic support for very simple index-driven locus traversals. Interface has been changed to	2010-01-29 03:14:26 +00:00
executive	Added IterableLocusContextQueue and test. Cleaned up tests, adding BaseTest where it didn't exist. Enhanced test runner to run only classes ending in ...Test.java, so that utility classes can sit alongside the tests but won't be run by JUnit.	2009-05-13 21:32:05 +00:00
io	Fix for problem where err stream remapped to output stream in certain cases, (hopefully) completing Matt's hat trick of fail. Thanks, unit tests.	2009-09-16 08:33:56 +00:00
iterators	ant clean is your friend....fixed test code dependent on an interface change.	2010-01-22 20:07:46 +00:00
refdata	Refactoring and migration of new allele/variantcontext/genotype code into oneoffprojects. NOT FOR USE. PlinkRod commented out due to dependence on this new, rapidly changing interface.	2010-01-26 13:53:29 +00:00
traversals	First successful test of new sharding system prototype. Can traverse over reads from a single	2010-01-15 03:35:55 +00:00
walkers	RealignerTargetCreator is officially live	2010-01-27 03:41:52 +00:00