chartl 01db93299c PlinkRodWithGenomeLoc now properly handels indels. ... There is now a DELETION_REFERENCE allele type to allow for the storage of multi-base references rather than point-mutation references. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2667 348d0f76-0448-11de-a6fe-93d51630548a		2010-01-23 07:34:52 +00:00
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arguments	Looks bigger than it is:	2010-01-15 00:14:35 +00:00
datasources	First successful test of new sharding system prototype. Can traverse over reads from a single	2010-01-15 03:35:55 +00:00
executive	Added IterableLocusContextQueue and test. Cleaned up tests, adding BaseTest where it didn't exist. Enhanced test runner to run only classes ending in ...Test.java, so that utility classes can sit alongside the tests but won't be run by JUnit.	2009-05-13 21:32:05 +00:00
io	Fix for problem where err stream remapped to output stream in certain cases, (hopefully) completing Matt's hat trick of fail. Thanks, unit tests.	2009-09-16 08:33:56 +00:00
iterators	ant clean is your friend....fixed test code dependent on an interface change.	2010-01-22 20:07:46 +00:00
refdata	PlinkRodWithGenomeLoc now properly handels indels.	2010-01-23 07:34:52 +00:00
traversals	First successful test of new sharding system prototype. Can traverse over reads from a single	2010-01-15 03:35:55 +00:00
walkers	- Fixed output for beagle header	2010-01-21 21:25:56 +00:00