Laurent Francioli 01b16abc8d Genotype quality calculation modified to handle all genotypes the same way. This is inconsistent with GQ output by the UG but is correct even for cases of poor quality genotypes.		2011-10-24 10:24:41 +02:00
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R	Fixing errors in queueJobReport runtime unit	2011-10-07 12:04:53 -07:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Genotype quality calculation modified to handle all genotypes the same way. This is inconsistent with GQ output by the UG but is correct even for cases of poor quality genotypes.	2011-10-24 10:24:41 +02:00
packages	Enable testing of the jars produced by the packaging system.	2011-10-14 03:08:28 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	GATK read group requirement iron hand	2011-10-06 08:40:35 -07:00
testdata	Oops, forgot the PED test file	2011-10-05 21:09:08 -07:00