chartl 951b7a2433 First of what will be an increasingly useful set of tools, compiled into one command-line runnable library -- the goal is to have one plotting library that's callable because of limitations on the number of files you can package with a GenePattern module. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2841 348d0f76-0448-11de-a6fe-93d51630548a		2010-02-15 16:51:47 +00:00
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generateBySamplePlot.R	R script for graphing depth of coverage by sample name, and generating a loess curve for each sample's data.	2009-12-10 21:58:01 +00:00
plot_Annotations_BinnedTruthMetrics.R	Making the dotted quartile lines more clear.	2010-02-03 22:23:09 +00:00
plot_residualError_OtherCovariate.R	Update to AnalyzeCovariates to make the histogram of PairedReadOrder look a little nicer	2010-01-13 20:26:31 +00:00
plot_residualError_QualityScoreCovariate.R	Added an option to AnalyzeCovariates to set the max value of the histograms to make them easier to directly compare.	2010-01-31 23:13:57 +00:00
plotting_library.R	First of what will be an increasingly useful set of tools, compiled into one command-line runnable library -- the goal is to have one plotting library that's callable because of limitations on the number of files you can package with a GenePattern module.	2010-02-15 16:51:47 +00:00
whole_exome_bait_selection.R	R script for selecting a variety of baits (using %GC content and normalized coverage) for Nanostring assessment from those used in the Agilent whole exome hybrid selection design.	2009-09-22 18:10:14 +00:00