Karthik Gururaj 018e9e2c5f 1. Cleaned up code ... 2. Split into DebugJNILoglessPairHMM and VectorLoglessPairHMM with base class JNILoglessPairHMM. DebugJNILoglessPairHMM can, in principle, invoke any other child class of JNILoglessPairHMM. 3. Added more profiling code for Java parts of LoglessPairHMM		2014-01-26 19:18:12 -08:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	1. Cleaned up code	2014-01-26 19:18:12 -08:00
test	Write a new tool for spliting reads that have N cigar string.	2014-01-01 22:21:36 -05:00