gatk3的最后一个经典版本3.8

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Karthik Gururaj 018e9e2c5f 1. Cleaned up code 2. Split into DebugJNILoglessPairHMM and VectorLoglessPairHMM with base class JNILoglessPairHMM. DebugJNILoglessPairHMM can, in principle, invoke any other child class of JNILoglessPairHMM. 3. Added more profiling code for Java parts of LoglessPairHMM		2014-01-26 19:18:12 -08:00
PairHMM_JNI	1. Cleaned up code	2014-01-26 19:18:12 -08:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	1. Cleaned up code	2014-01-26 19:18:12 -08:00
public	1. Cleaned up code	2014-01-26 19:18:12 -08:00
settings	Rev'ing the Variant jar to incorporate some patches to the BCF encoder that Menachem needs.	2014-01-02 23:33:17 -05:00
.gitignore	Temporary commit before moving to new native library	2014-01-24 16:29:35 -08:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	1. Added support for JNI integration for LoglessCaching PairHMM AVX	2014-01-15 11:07:09 -08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Changing from scala 2.9.2 to 2.10.2.	2013-09-23 12:42:22 -04:00

The Genome Analysis Toolkit