gatk3的最后一个经典版本3.8

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mozdal 0170d4f3d5 Got rid of the MMX instructions in the SSE version of the code. Handling the mask operations in a class, which is defined for each version of SSE and AVX implementations separately.		2014-01-21 09:30:15 -08:00
PairHMM_JNI	Got rid of the MMX instructions in the SSE version of the code. Handling the mask operations in a class, which is defined for each version of SSE and AVX implementations separately.	2014-01-21 09:30:15 -08:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the	2014-01-20 08:03:42 -08:00
public	1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the	2014-01-20 08:03:42 -08:00
settings	Rev'ing the Variant jar to incorporate some patches to the BCF encoder that Menachem needs.	2014-01-02 23:33:17 -05:00
.gitignore	Added support for dynamic selection between AVX and un-vectorized C++,	2014-01-18 11:07:23 -08:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	1. Added support for JNI integration for LoglessCaching PairHMM AVX	2014-01-15 11:07:09 -08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Changing from scala 2.9.2 to 2.10.2.	2013-09-23 12:42:22 -04:00

The Genome Analysis Toolkit