gatk-3.8

History

ebanks 4678613893 Significant fixes for the Genomic Annotator. 1. Rip out all of Ben's code intended to circumvent the stable VCF Writer output system in multi-threaded mode (I threw up a little when I saw this code). This will improve memory consumption when running with -nt. 2. Don't annotate indels or > bi-allelic sites. 3. Fix bug where not all records were making it into the output VCF. 4. General code clean up. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4118 348d0f76-0448-11de-a6fe-93d51630548a	2010-08-25 20:16:50 +00:00
..
net/sf/picard/reference	IndexedFastaSequenceFile is now in Picard; transitioning to that implementation.	2010-07-01 04:40:31 +00:00
org/broadinstitute/sting	Significant fixes for the Genomic Annotator.	2010-08-25 20:16:50 +00:00

ebanks 4678613893 Significant fixes for the Genomic Annotator.

1. Rip out all of Ben's code intended to circumvent the stable VCF Writer output system in multi-threaded mode (I threw up a little when 
I saw this code).  This will improve memory consumption when running with -nt.
2. Don't annotate indels or > bi-allelic sites.
3. Fix bug where not all records were making it into the output VCF.
4. General code clean up.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4118 348d0f76-0448-11de-a6fe-93d51630548a

2010-08-25 20:16:50 +00:00

net/sf/picard/reference

IndexedFastaSequenceFile is now in Picard; transitioning to that implementation.

2010-07-01 04:40:31 +00:00

org/broadinstitute/sting

Significant fixes for the Genomic Annotator.

2010-08-25 20:16:50 +00:00