Mark DePristo 010034a650 Optimization/bugfix for PerReadAlleleLikelihoodMap ... -- Add() call had a misplaced map.put call, so that we were always putting the result of get() back into the map, when what we really intended was to only put the value back in if the original get() resulted in a null and so initialized the result		2013-05-21 16:18:57 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Optimization/bugfix for PerReadAlleleLikelihoodMap	2013-05-21 16:18:57 -04:00
test	Optimization for ActiveRegion.removeAll	2013-05-21 16:18:57 -04:00