delangel 00ac51acc8 Added several integration tests for UG indel caller: ... - Basic - Multiple technology - Test minIndelCnt parameter Added also 2 disabled tests: - Parallelization: issue w/code right now is that if -nt > 1, filter field shows "PASS" instead to ".", cause TBD - Genotype given alleles mode: code not working yet. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5404 348d0f76-0448-11de-a6fe-93d51630548a		2011-03-08 16:21:21 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Testing modules now use wider windows and heftier shift, hopefully this will remove some of the noisiness of the results. Some UStatistics were changed to TStatistics to try and limit noisiness as well. Walker will also additionally write out wiggle files directly (which can be converted into "proper" tdf files via igvtools tile [args] [in].wig [out].tdf [ref]) subject to some restrictions. MWU could get stuck in a long-running recursive regime, it'd be nice to have a table lookup or a good small-n large-m approximation, for now the uniform should work just fine.	2011-03-08 15:26:13 +00:00
test	Added several integration tests for UG indel caller:	2011-03-08 16:21:21 +00:00