ebanks 009e71fcd9 We need to sort cleaned reads ourselves (instead of letting SAMFileWriter ... do it) because the SAM headers are often screwed up and claim to be "unsorted". While here, I broke off the module from the SortSamIterator in case someone else wants to use it. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@654 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-11 15:43:42 +00:00
..
config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	We need to sort cleaned reads ourselves (instead of letting SAMFileWriter	2009-05-11 15:43:42 +00:00
test/org/broadinstitute/sting	my move ended up being a copy, so this is to delete dupplicate files.	2009-05-11 02:10:26 +00:00