ebanks 0097106938 VariantFiltration can now filter specific samples. ... This is *NOT* an ideal implementation. One day when we have lots of free time (or a greater desire), we will implement this correctly and sophisticatedly using all the power of JEXL. For now, though, this will have to do. Docs coming tonight. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3060 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-22 20:45:11 +00:00
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alignment	adding the initial ROD for Reads support; more convenience methods in ReadMetaDataTracker to come.	2010-03-03 15:56:44 +00:00
analyzecovariates	Removed the StingException when mkdir fails for Sendu in AnalyzeCovariates. Incremental updates to VariantOptimizer.	2010-03-16 19:45:02 +00:00
gatk	VariantFiltration can now filter specific samples.	2010-03-22 20:45:11 +00:00
oneoffprojects	Minor bug workaround in GenotypeConcordance module (see todo). General platform read filter. You can say -rl Platform illumina to remove all SLX reads	2010-03-22 02:47:09 +00:00
playground	clean-up before annotating VariantEval2 for output.	2010-03-22 07:39:20 +00:00
utils	VariantFiltration can now filter specific samples.	2010-03-22 20:45:11 +00:00