kiran d896a4a9d3 Given genotypes for a trio, phases child by transmission. Computes probability that the determined phase is correct given that the genotypes for mom and dad are correct (useful if you want to use this to compare phasing accuracy, but want to break that comparison down by phasing confidence in the truth set). Optionally filters out sites where the phasing is indeterminate. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5824 348d0f76-0448-11de-a6fe-93d51630548a		2011-05-19 21:27:37 +00:00
..
config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Given genotypes for a trio, phases child by transmission. Computes probability that the determined phase is correct given that the genotypes for mom and dad are correct (useful if you want to use this to compare phasing accuracy, but want to break that comparison down by phasing confidence in the truth set). Optionally filters out sites where the phasing is indeterminate.	2011-05-19 21:27:37 +00:00
test	Cleanup GATKBAMIndex unit test to allow a more efficient access pattern for	2011-05-12 21:50:33 +00:00