gatk3的最后一个经典版本3.8

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Khalid Shakir 0092a0b9eb Faster builds, with updates to documentation generation. Reading the multiple GATKText files as a single stream, especially with new top level target executable jar files pointing to a lib folder. Don't dirty the build with a new GATKText.properties if input files are unmodified. Stop warning on undocumented abstract classes. Fixed ClassNotFoundException/NoClassDefFoundError by fixing ResourceBundleExtractorDoclet artifact. Excluding Exceptions from documentation. Removed custom log4j dependency from ResourceBundleExtractorDoclet. Stop generating the dependency reduced pom during shade. Stop regenerating gsalib when the files are already up to date. Disabled mvn site generation from external-example.		2014-11-05 00:32:23 +08:00
licensing	Updated license information	2014-10-14 17:10:12 -04:00
protected	Faster builds, with updates to documentation generation.	2014-11-05 00:32:23 +08:00
public	Faster builds, with updates to documentation generation.	2014-11-05 00:32:23 +08:00
settings/helpTemplates	Output JSON version of docs for Galaxy	2014-10-09 06:42:25 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Faster builds, with updates to documentation generation.	2014-11-05 00:32:23 +08:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/