kshakir 81479229e1 QScript authors can now tag functions as intermediate. Functions tagged as intermediate will be skipped unless another function in the graph needs their output. ... Re-logging the failed jobs and the path to their log files at the end of a run. Added a parameter -bigMemQueue for the fullCallingPipeline.q instead of hardcoding gsa (gsa was backed up and it was actually faster to run on week). git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4520 348d0f76-0448-11de-a6fe-93d51630548a		2010-10-18 22:11:14 +00:00
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org/broadinstitute/sting/queue	QScript authors can now tag functions as intermediate. Functions tagged as intermediate will be skipped unless another function in the graph needs their output.	2010-10-18 22:11:14 +00:00
BaseTransitionTableCalculator.scala	Scala walkers can now be build and run like any other walker in the GATK. Added the getUrlsForClasspath to PackageUtils, the Reflections package isn't getting the manifest files from jars in the classpath, and so we weren't seeing any walkers outside of the GenomeAnalysisTK.jar.	2009-11-02 06:02:41 +00:00
HelloWorld.scala	support for scala walkers	2009-08-28 00:15:01 +00:00
ScalaCountLoci.scala	Scala walkers can now be build and run like any other walker in the GATK. Added the getUrlsForClasspath to PackageUtils, the Reflections package isn't getting the manifest files from jars in the classpath, and so we weren't seeing any walkers outside of the GenomeAnalysisTK.jar.	2009-11-02 06:02:41 +00:00