/* * Copyright (c) 2012 The Broad Institute * * Permission is hereby granted, free of charge, to any person * obtaining a copy of this software and associated documentation * files (the "Software"), to deal in the Software without * restriction, including without limitation the rights to use, * copy, modify, merge, publish, distribute, sublicense, and/or sell * copies of the Software, and to permit persons to whom the * Software is furnished to do so, subject to the following * conditions: * * The above copyright notice and this permission notice shall be * included in all copies or substantial portions of the Software. * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, * EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES * OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND * NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT * HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, * WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR * THE USE OR OTHER DEALINGS IN THE SOFTWARE. */ package org.broadinstitute.sting.commandline; import org.broadinstitute.sting.BaseTest; import org.broadinstitute.variant.variantcontext.VariantContext; import org.testng.Assert; import org.testng.annotations.Test; import org.testng.annotations.BeforeMethod; /** * Test suite for the parsing engine. */ public class RodBindingUnitTest extends BaseTest { Tags mytags = new Tags(); @BeforeMethod public void setUp() { RodBinding.resetNameCounter(); } @Test public void testStandardRodBinding() { RodBinding b = new RodBinding(VariantContext.class, "b", "foo", "vcf", mytags); Assert.assertEquals(b.getName(), "b"); Assert.assertEquals(b.getType(), VariantContext.class); Assert.assertEquals(b.getSource(), "foo"); Assert.assertEquals(b.getTribbleType(), "vcf"); Assert.assertEquals(b.isBound(), true); } @Test public void testUnboundRodBinding() { RodBinding u = RodBinding.makeUnbound(VariantContext.class); Assert.assertEquals(u.getName(), RodBinding.UNBOUND_VARIABLE_NAME); Assert.assertEquals(u.getSource(), RodBinding.UNBOUND_SOURCE); Assert.assertEquals(u.getType(), VariantContext.class); Assert.assertEquals(u.getTribbleType(), RodBinding.UNBOUND_TRIBBLE_TYPE); Assert.assertEquals(u.isBound(), false); } @Test public void testMultipleBindings() { String name = "binding"; RodBinding b1 = new RodBinding(VariantContext.class, name, "foo", "vcf", mytags); Assert.assertEquals(b1.getName(), name); Assert.assertEquals(b1.getType(), VariantContext.class); Assert.assertEquals(b1.getSource(), "foo"); Assert.assertEquals(b1.getTribbleType(), "vcf"); Assert.assertEquals(b1.isBound(), true); RodBinding b2 = new RodBinding(VariantContext.class, name, "foo", "vcf", mytags); Assert.assertEquals(b2.getName(), name + "2"); Assert.assertEquals(b2.getType(), VariantContext.class); Assert.assertEquals(b2.getSource(), "foo"); Assert.assertEquals(b2.getTribbleType(), "vcf"); Assert.assertEquals(b2.isBound(), true); } }