yX3AnltsqIlXH9kAQqTWHQUd8CQ5bikz Failed to parse Genome Location string: 20:10,000,000-10,000,001x org.broadinstitute.sting.utils.GenomeLocParser.parseGenomeLoc(GenomeLocParser.java:377) org.broadinstitute.sting.utils.interval.IntervalUtils.parseIntervalArguments(IntervalUtils.java:82) org.broadinstitute.sting.commandline.IntervalBinding.getIntervals(IntervalBinding.java:106) org.broadinstitute.sting.gatk.GenomeAnalysisEngine.loadIntervals(GenomeAnalysisEngine.java:618) org.broadinstitute.sting.gatk.GenomeAnalysisEngine.initializeIntervals(GenomeAnalysisEngine.java:585) org.broadinstitute.sting.gatk.GenomeAnalysisEngine.execute(GenomeAnalysisEngine.java:231) org.broadinstitute.sting.gatk.CommandLineExecutable.execute(CommandLineExecutable.java:128) org.broadinstitute.sting.commandline.CommandLineProgram.start(CommandLineProgram.java:236) org.broadinstitute.sting.commandline.CommandLineProgram.start(CommandLineProgram.java:146) org.broadinstitute.sting.gatk.CommandLineGATK.main(CommandLineGATK.java:92) Position: '10,000,001x' contains invalid chars. org.broadinstitute.sting.utils.GenomeLocParser.parsePosition(GenomeLocParser.java:411) org.broadinstitute.sting.utils.GenomeLocParser.parseGenomeLoc(GenomeLocParser.java:374) org.broadinstitute.sting.utils.interval.IntervalUtils.parseIntervalArguments(IntervalUtils.java:82) org.broadinstitute.sting.commandline.IntervalBinding.getIntervals(IntervalBinding.java:106) org.broadinstitute.sting.gatk.GenomeAnalysisEngine.loadIntervals(GenomeAnalysisEngine.java:618) org.broadinstitute.sting.gatk.GenomeAnalysisEngine.initializeIntervals(GenomeAnalysisEngine.java:585) org.broadinstitute.sting.gatk.GenomeAnalysisEngine.execute(GenomeAnalysisEngine.java:231) org.broadinstitute.sting.gatk.CommandLineExecutable.execute(CommandLineExecutable.java:128) org.broadinstitute.sting.commandline.CommandLineProgram.start(CommandLineProgram.java:236) org.broadinstitute.sting.commandline.CommandLineProgram.start(CommandLineProgram.java:146) org.broadinstitute.sting.gatk.CommandLineGATK.main(CommandLineGATK.java:92)

false

true

2012/03/10 20.19.52

CountReads

1.4-483-g63ecdb2

85000192

129957888

depristo

10.0.1.10

Apple Inc.-1.6.0_26 Mac OS X-x86_64 0