4.0.0 org.broadinstitute.gatk gatk-aggregator 3.4-SNAPSHOT ../.. gatk-queue-package-distribution jar GATK Queue Package Distribution ${project.basedir}/../.. Queue org.broadinstitute.gatk.queue.QCommandLine ${project.groupId} gatk-queue ${project.version} ${project.groupId} gatk-package-distribution ${project.version} ${project.groupId} gatk-queue-extensions-distribution ${project.version} org.scala-lang scala-library org.scala-lang scala-compiler picard picard javax.mail mail net.java.dev.jna jna com.google.code.cofoja cofoja net.sf.snpeff snpeff commons-httpclient commons-httpclient ${project.groupId} gatk-utils ${project.version} example-resources tar.bz2 ${project.groupId} gatk-queue-extensions-public ${project.version} example-resources tar.bz2 ${project.groupId} gatk-queue ${project.version} test-jar test com.google.caliper caliper test org.apache.maven.plugins maven-surefire-plugin unit-tests ${gatk.serialunittests.skipped} org.broadinstitute.gatk:.* org.apache.maven.plugins maven-failsafe-plugin integration-tests ${gatk.serialintegrationtests.skipped} org.broadinstitute.gatk:.* queue-tests ${gatk.serialqueuetests.skipped} org.broadinstitute.gatk:.* large-scale-tests ${gatk.seriallargescaletests.skipped} org.broadinstitute.gatk:.* knowledge-base-tests ${gatk.serialknowledgebasetests.skipped} org.broadinstitute.gatk:.* org.apache.maven.plugins maven-jar-plugin executable-jar ${gatk.jar.phase} default-jar none unshaded-default-jar ${gatk.jar.phase} org.apache.maven.plugins maven-dependency-plugin unpack-direct-dependencies ${gatk.unpack.phase} executable-jar-lib ${gatk.jar.phase} org.apache.maven.plugins maven-shade-plugin package-jar ${gatk.shade.phase} org.apache.maven.plugins maven-assembly-plugin binary-dist ${gatk.shade.phase} com.pyx4j maven-junction-plugin link-executable-jar ${gatk.jar.phase} link-package-jar ${gatk.shade.phase} link-git-release ${gatk.shade.phase} org.apache.maven.plugins maven-install-plugin default-install none install-package install gsadev gsadev none none none