4.0.0 org.broadinstitute.gatk gatk-aggregator 3.9-SNAPSHOT ../.. gatk-queue-extensions-public jar GATK Queue Extensions Public ${project.basedir}/../.. ${project.build.directory}/generated-sources/gatk-extensions false gatk-queue-package-distribution ${project.groupId} gatk-tools-public ${project.version} ${project.groupId} gatk-queue ${project.version} org.scala-lang scala-compiler log4j log4j com.github.broadinstitute picard ${project.groupId} gatk-queue-extensions-generator ${project.version} runtime ${project.groupId} gatk-utils ${project.version} test-jar test ${project.groupId} gatk-queue ${project.version} test-jar test org.codehaus.mojo exec-maven-plugin generate-gatk-extensions exec generate-sources ${gatk.generate-gatk-extensions.skipped} java -classpath org.broadinstitute.gatk.queue.extensions.gatk.GATKExtensionsGenerator -l WARN -outDir ${gatk.extensions.sources} org.codehaus.mojo build-helper-maven-plugin add-gatk-extensions add-source generate-sources ${gatk.extensions.sources} org.apache.maven.plugins maven-assembly-plugin example-resources ${gatk.generate-resources.phase} org.scala-tools maven-scala-plugin org.apache.maven.plugins maven-invoker-plugin package-unittests package-integrationtests package-largescaletests package-knowledgebasetests package-queuetests