4.0.0 org.broadinstitute.sting sting-aggregator 2.6-SNAPSHOT ../.. queue-package jar Queue Package ${project.basedir}/../.. prepare-package package Queue org.broadinstitute.sting.queue.QCommandLine ${project.groupId} queue-framework ${project.version} ${project.groupId} gatk-package ${project.version} org.scala-lang scala-library org.scala-lang scala-compiler net.sf picard javax.mail mail net.java.dev.jna jna com.google.code.cofoja cofoja net.sf.snpeff snpeff ${project.groupId} gatk-framework ${project.version} example-resources tar.bz2 ${project.groupId} queue-framework ${project.version} example-resources tar.bz2 org.apache.maven.plugins maven-dependency-plugin unpack-direct-dependencies ${sting.unpack.phase} org.apache.maven.plugins maven-shade-plugin sting-executable ${sting.shade.phase} org.apache.maven.plugins maven-assembly-plugin binary-dist ${sting.shade.phase} com.pyx4j maven-junction-plugin link-git-release ${sting.shade.phase} org.apache.maven.plugins maven-install-plugin default-install none install-package install private ${basedir}/../../private/queue-private/pom.xml ${project.groupId} queue-private ${project.version} true