\documentclass[10pt]{article} \usepackage[lmargin=0.3in, rmargin=0.3in, tmargin=0.9in, bmargin=0.9in, paperwidth=10.0in, paperheight=7.5in]{geometry} \usepackage{multicol} \usepackage{graphicx} \usepackage{fancyhdr} \pagestyle{fancy} \begin{document} \lhead{\bfseries{\Large{Callset concordance - $population$ samples}}} \rhead{} \chead{} \begin{center} \begin{tabular}{|r|l|l|} \multicolumn{3}{l}{\bfseries{UG and QCALL}} \\ \hline Set & Variants & Ti/Tv \\ \hline All SNPs & $Intersection.called.all.nVariantLoci$ & $Intersection.called.all.ti/tv_ratio$ \\ Known SNPs & $Intersection.called.known.nVariantLoci$ & $Intersection.called.known.ti/tv_ratio$ \\ Novel SNPs & $Intersection.called.novel.nVariantLoci$ & $Intersection.called.novel.ti/tv_ratio$ \\ Filtered in UG, present in QCALL & $InUG-FilteredInQCALL.called.all.nVariantLoci$ & $InUG-FilteredInQCALL.called.all.ti/tv_ratio$ \\ Filtered in QCALL, present in UG & $InQCALL-FilteredInUG.called.all.nVariantLoci$ & $InQCALL-FilteredInUG.called.all.ti/tv_ratio$ \\ \hline \end{tabular} \\[0.1in] \includegraphics[width=95mm, type=png, ext=.png, read=.png]{$venndiagram$} \end{center} \begin{multicols}{2} \hfill \begin{tabular}{|r|l|l|} \multicolumn{3}{l}{\bfseries{UG only}} \\ \hline Set & Variants & Ti/Tv \\ \hline All SNPs & $UG.called.all.nVariantLoci$ & $UG.called.all.ti/tv_ratio$ \\ Known SNPs & $UG.called.known.nVariantLoci$ & $UG.called.known.ti/tv_ratio$ \\ Novel SNPs & $UG.called.novel.nVariantLoci$ & $UG.called.novel.ti/tv_ratio$ \\ Filtered & $UG.filtered.all.nVariantLoci$ & $UG.filtered.all.ti/tv_ratio$ \\ \hline \end{tabular} \begin{tabular}{|r|l|l|} \multicolumn{3}{l}{\bfseries{QCALL only}} \\ \hline Set & Variants & Ti/Tv \\ \hline All SNPs & $QCALL.called.all.nVariantLoci$ & $QCALL.called.all.ti/tv_ratio$ \\ Known SNPs & $QCALL.called.known.nVariantLoci$ & $QCALL.called.known.ti/tv_ratio$ \\ Novel SNPs & $QCALL.called.novel.nVariantLoci$ & $QCALL.called.novel.ti/tv_ratio$ \\ Filtered & $QCALL.filtered.all.nVariantLoci$ & $QCALL.filtered.all.ti/tv_ratio$ \\ \hline \end{tabular} \end{multicols} \lfoot{} \cfoot{} \rfoot{\small{1,000 Genomes Automated Data Processing Report ($timestamp$)}} \end{document}