\documentclass[10pt]{article} \usepackage[lmargin=0.3in, rmargin=0.3in, tmargin=0.9in, bmargin=0.9in, paperwidth=10.0in, paperheight=7.5in]{geometry} \usepackage{multicol} \usepackage{graphicx} \usepackage{fancyhdr} \pagestyle{fancy} \begin{document} \lhead{\bfseries{\Large{Sequencing and variant summary - $population$ samples}}} \rhead{} \chead{} \begin{tabular}{|r|l|l|} \multicolumn{3}{l}{\bfseries{Sequencing summary}} \\ \hline & Lanes & Aligned Lanes \\ \hline All & $allLanes$ & $allAlignedLanes$ \\ Passed QC & $passedQCLanes$ & $passedQCAlignedLanes$ \\ Failed Genotype QC & $failedGenotypeQCLanes$ & $failedGenotypeQCAlignedLanes$ \\ Failed one of the DCC processes & $failedDCCProcessLanes$ & $failedDCCProcessAlignedLanes$ \\ Not yet available from archive & $failedUnavailableLanes$ & $failedUnavailableAlignedLanes$ \\ Suppressed in archive & $failedSuppressedLanes$ & $failedSuppressedAlignedLanes$ \\ \hline \end{tabular} \begin{tabular}{|r|l|l|} \multicolumn{3}{l}{\bfseries{Variant summary}} \\ \hline & UnifiedGenotyper & QCALL \\ \hline Called samples & $ugSamples$ & $qcallSamples$ \\ SNPs (all) & $ugAllSNPs$ & $qcallAllSNPs$ \\ Ti/Tv (all) & $ugAllTiTv$ & $qcallAllTiTv$ \\ SNPs (known) & $ugKnownSNPs$ & $qcallKnownSNPs$ \\ Ti/Tv (known) & $ugKnownTiTv$ & $qcallKnownTiTv$ \\ SNPs (novel) & $ugNovelSNPs$ & $qcallNovelSNPs$ \\ Ti/Tv (novel) & $ugNovelTiTv$ & $qcallNovelTiTv$ \\ \hline \end{tabular} \lfoot{} \cfoot{} \rfoot{\small{1,000 Genomes Automated Data Processing Report ($timestamp$)}} \end{document}