4.0.0 org.broadinstitute.gatk gatk-aggregator 3.2-SNAPSHOT ../.. gatk-queue jar GATK Queue ${project.basedir}/../.. gatk-queue-package-distribution ${project.groupId} gatk-tools-public ${project.version} org.scala-lang scala-compiler log4j log4j net.sf.jgrapht jgrapht org.apache.commons commons-email javax.mail mail ${project.groupId} gatk-tools-public ${project.version} test-jar test org.scala-tools maven-scala-plugin com.pyx4j maven-junction-plugin link-public-qscript process-test-resources unlink-public-qscript clean org.apache.maven.plugins maven-resources-plugin copy-resource-bundle-log4j prepare-package org.apache.maven.plugins maven-javadoc-plugin extract-resource-bundle prepare-package org.apache.maven.plugins maven-invoker-plugin package-unittests package-integrationtests package-largescaletests package-knowledgebasetests package-queuetests private-testdata ${basedir}/../../private/pom.xml com.pyx4j maven-junction-plugin link-private-testdata process-test-resources unlink-private-testdata clean link-private-qscript process-test-resources unlink-private-qscript clean