GenomeAnalysisTK org.broadinstitute.sting.gatk.CommandLineGATK org.broadinstitute.sting.gatk.walkers.DepthOfCoverageWalker org.broadinstitute.sting.gatk.walkers.PileupWalker org.broadinstitute.sting.gatk.walkers.PrintReadsWalker java/src/org/broadinstitute/sting/gatk/walkers/DepthOfCoverageWalker.java java/src/org/broadinstitute/sting/gatk/walkers/PileupWalker.java java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java java/src/org/broadinstitute/sting/gatk/examples/HelloWalker.java java/src/org/broadinstitute/sting/gatk/examples/build.xml testdata/exampleBAM.bam testdata/exampleBAM.bam.bai testdata/exampleFASTA.fasta testdata/exampleFASTA.fasta.fai testdata/exampleFASTA.dict