picard-private-parts
edu.mit.broad.picard.directed.IntervalList
edu.mit.broad.picard.genotype.DiploidGenotype
edu.mit.broad.picard.genotype.geli.GeliFileReader
edu.mit.broad.picard.genotype.geli.GeliFileWriter
edu.mit.broad.picard.genotype.geli.GenotypeLikelihoods
edu.mit.broad.picard.util.BasicTextFileParser
edu.mit.broad.picard.util.Interval
edu.mit.broad.picard.util.IntervalTree
edu.mit.broad.picard.util.OverlapDetector
edu.mit.broad.picard.util.PasteParser