4.0.0 org.broadinstitute.sting sting-aggregator 2.8-SNAPSHOT ../.. gatk-protected jar GATK Protected ${project.basedir}/../.. gatk-package ${project.groupId} gatk-framework ${project.version} net.sf.jgrapht jgrapht gov.nist.math jama it.unimi.dsi fastutil ${project.groupId} gatk-framework ${project.version} test-jar test org.testng testng test com.google.caliper caliper test org.apache.maven.plugins maven-resources-plugin copy-resource-bundle-log4j prepare-package org.apache.maven.plugins maven-javadoc-plugin extract-resource-bundle prepare-package org.apache.maven.plugins maven-invoker-plugin package-unittests package-integrationtests package-largescaletests package-knowledgebasetests package-pipelinetests private ${basedir}/../../private/gatk-private/pom.xml com.pyx4j maven-junction-plugin link-private-testdata process-test-resources unlink-private-testdata clean