4.0.0 org.broadinstitute.sting sting-aggregator 3.1-SNAPSHOT ../.. queue-package jar Queue Package ${project.basedir}/../.. prepare-package package Queue org.broadinstitute.sting.queue.QCommandLine ${project.groupId} queue-framework ${project.version} ${project.groupId} gatk-package ${project.version} org.scala-lang scala-library org.scala-lang scala-compiler net.sf picard javax.mail mail net.java.dev.jna jna com.google.code.cofoja cofoja net.sf.snpeff snpeff ${project.groupId} gatk-framework ${project.version} example-resources tar.bz2 ${project.groupId} queue-framework ${project.version} example-resources tar.bz2 ${project.groupId} queue-framework ${project.version} test-jar test ${project.groupId} gatk-framework ${project.version} test-jar test org.testng testng test com.google.caliper caliper test org.apache.maven.plugins maven-surefire-plugin unit-tests ${sting.serialunittests.skipped} org.broadinstitute.sting:.* org.apache.maven.plugins maven-failsafe-plugin integration-tests ${sting.serialintegrationtests.skipped} org.broadinstitute.sting:.* queue-tests ${sting.serialqueuetests.skipped} org.broadinstitute.sting:.* large-scale-tests ${sting.seriallargescaletests.skipped} org.broadinstitute.sting:.* knowledge-base-tests ${sting.serialknowledgebasetests.skipped} org.broadinstitute.sting:.* org.apache.maven.plugins maven-dependency-plugin unpack-direct-dependencies ${sting.unpack.phase} org.apache.maven.plugins maven-shade-plugin sting-executable ${sting.shade.phase} org.apache.maven.plugins maven-assembly-plugin binary-dist ${sting.shade.phase} com.pyx4j maven-junction-plugin link-binary-jar ${sting.shade.phase} link-git-release ${sting.shade.phase} org.apache.maven.plugins maven-install-plugin default-install none install-package install private ${basedir}/../../private/queue-private/pom.xml ${project.groupId} queue-private ${project.version} true ${project.groupId} queue-private ${project.version} test-jar test true com.pyx4j maven-junction-plugin link-private-testdata process-test-resources unlink-private-testdata clean link-private-qscript process-test-resources unlink-private-qscript clean packagetests-enabled sting.packagetests.enabled true none none