##:GATKReport.v0.1 CompOverlap : The overlap between eval and comp sites CompOverlap CompRod EvalRod JexlExpression Novelty nEvalVariants nCompVariants novelSites nVariantsAtComp compRate nConcordant concordantRate CompOverlap none eval none all 0 0 0 0 0.00000000 0 0.00000000 CompOverlap none eval none known 0 0 0 0 0.00000000 0 0.00000000 CompOverlap none eval none novel 0 0 0 0 0.00000000 0 0.00000000 ##:GATKReport.v0.1 CountVariants : Counts different classes of variants in the sample CountVariants CompRod EvalRod JexlExpression Novelty nProcessedLoci nCalledLoci nRefLoci nVariantLoci variantRate variantRatePerBp nSNPs nMNPs nInsertions nDeletions nComplex nNoCalls nHets nHomRef nHomVar nSingletons heterozygosity heterozygosityPerBp hetHomRatio indelRate indelRatePerBp deletionInsertionRatio CountVariants none eval none all 100000 100000 100000 0 0.00000000 0.00000000 0 0 0 0 0 99872 0 128 0 0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 CountVariants none eval none known 100000 0 0 0 0.00000000 0.00000000 0 0 0 0 0 0 0 0 0 0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 CountVariants none eval none novel 100000 100000 100000 0 0.00000000 0.00000000 0 0 0 0 0 99872 0 128 0 0 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 ##:GATKReport.v0.1 SimpleMetricsByAC.metrics : TiTv by allele count SimpleMetricsByAC.metrics CompRod EvalRod JexlExpression Novelty row AC nTi nTv n TiTv SimpleMetricsByAC.metrics none eval none all ac0 0 0 0 0 0.0 SimpleMetricsByAC.metrics none eval none all ac1 1 0 0 0 0.0 SimpleMetricsByAC.metrics none eval none all ac2 2 0 0 0 0.0 SimpleMetricsByAC.metrics none eval none known ac0 0 0 0 0 0.0 SimpleMetricsByAC.metrics none eval none known ac1 1 0 0 0 0.0 SimpleMetricsByAC.metrics none eval none known ac2 2 0 0 0 0.0 SimpleMetricsByAC.metrics none eval none novel ac0 0 0 0 0 0.0 SimpleMetricsByAC.metrics none eval none novel ac1 1 0 0 0 0.0 SimpleMetricsByAC.metrics none eval none novel ac2 2 0 0 0 0.0 ##:GATKReport.v0.1 TiTvVariantEvaluator : Ti/Tv Variant Evaluator TiTvVariantEvaluator CompRod EvalRod JexlExpression Novelty nTi nTv tiTvRatio nTiInComp nTvInComp TiTvRatioStandard TiTvVariantEvaluator none eval none all 0 0 0.00000000 0 0 0.00000000 TiTvVariantEvaluator none eval none known 0 0 0.00000000 0 0 0.00000000 TiTvVariantEvaluator none eval none novel 0 0 0.00000000 0 0 0.00000000 ##:GATKReport.v0.1 ValidationReport : Assess site accuracy and sensitivity of callset against follow-up validation assay ValidationReport CompRod EvalRod JexlExpression Novelty nComp TP FP FN TN sensitivity PPV FDR CompMonoEvalNoCall CompMonoEvalFiltered CompMonoEvalMono CompMonoEvalPoly CompPolyEvalNoCall CompPolyEvalFiltered CompPolyEvalMono CompPolyEvalPoly CompFiltered nDifferentAlleleSites ValidationReport none eval none all 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 ValidationReport none eval none known 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 ValidationReport none eval none novel 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0